Publications

Influence of hydrometeorological risk factors on child diarrhea and enteropathogens in rural Bangladesh

Published in PLOS Neglected Tropical Diseases, 2024

Grembi JA, Nguyen AT, Riviere M, Heitmann GB, Patil A, Athni TS, Djajadi S, Ercumen A, Lin A, Crider Y, Mertens A, Karim MA, Islam MO, Miah R, Famida SL, Hossen MS, Mutsuddi P, Ali S, Rahman MZ, Hussain Z, Shoab AK, Haque R, Rahman M, Unicomb L, Luby SP, Arnold BF, Bennett A, Benjamin-Chung J. (2024). "Influence of hydrometeorological risk factors on child diarrhea and enteropathogens in rural Bangladesh." PLoS NTD. 18(5).
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Profiling the human intestinal environment under physiological conditions

Published in Nature, 2023

This paper showcases a novel device that passively samples the small intestine. We highlight major differences in the microbiome, virome, metabolome, and proteome between stool and small intestine samples.

Shalon D*, Culver RN*, Grembi JA*, Folz J*, Treit P, Shi H, Rosenberger FA, Dethlefsen L, Meng X, Yaffe E, Aranda-Diaz A, Geyer PE, Mueller-Reif JB, Spencer S, Patterson AD, Triadafilopoulos G, Holmes SP, Mann M, Fiehn O, Relman DA, Huang KC. (2023). "Profiling the human intestinal environment under physiological conditions." Nature. 617(7961).
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Introducing riskCommunicator: an R package to obtain interpretable effect estimates for public health

Published in PLoS One, 2022

Grembi JA, Rogawski McQuade ET. (2022). "Introducing riskCommunicator: an R package to obtain interpretable effect estimates for public health." PLoS One. 17(7).
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Effect of water, sanitation, handwashing and nutrition interventions on enteropathogens in children 14 months old: a cluster-randomized controlled trial in rural Bangladesh

Published in The Journal of Infectious Diseases, 2020

Grembi JA, Lin A, Karim Md. A, Islam Md. O, Miah R, Arnold BF, Rogawski McQuade ET, Ali S, Rahman Md. Z, Hussain Z, Shoab AK, Famida SL, Hossen Md. S, Mutsuddi P, Rahman M, Unicomb L, Haque R, Taniuchi M, Liu J, Platts-Mills J, Holmes SP, Stewart CP, Benjamin-Chung J, Colford JM, Houpt E, and Luby SP. (2020). "Effect of water, sanitation, handwashing and nutrition interventions on enteropathogens in children 14 months old: a cluster-randomized controlled trial in rural Bangladesh." JID. jiaa549.
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High-Throughput multiparallel enteropathogen detection via nano-liter qPCR

Published in Frontiers in Cellular and Infection Microbiology, 2020

Grembi JA, Mayer-Blackwell K, Luby SP, Spormann AM. (2020). "High-Throughput multiparallel enteropathogen detection via nano-liter qPCR." Front. Cell. Infect. Microbiol. 10(351).
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Gut microbiota plasticity is correlated with sustained weight loss on a low-carb or low-fat dietary intervention

Published in Scientific Reports, 2020

This paper looks for differences in the gut microbiota at baseline that might predict successful, sustained weight loss on a low-carb or low-fat diet. We found that the plasticity (day-to-day variability) of the gut microbota was correlated with long-term (12-month) weight loss in a diet-dependent manner. We emphasize the importance of validation cohorts in microbiome studies to generalize findings.

Grembi JA*, Nguyen LH*, Haggerty TD, Gardner CD, Holmes SP, Parsonnet J. (2020). "Gut microbiota plasticity is correlated with sustained weight loss on a low-carb or low-fat dietary intervention." Sci. Rep.. 10(1).
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